J3_5FL8_004

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCCAUAUCUAC*GUAAGAGCC*GGUGC

Length

25 nucleotides

Bulged bases

5FL8|1|z|U|12, 5FL8|1|z|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FL8|1|z|G|8
5FL8|1|z|C|9
5FL8|1|z|C|10
5FL8|1|z|A|11
5FL8|1|z|U|12
5FL8|1|z|A|13
5FL8|1|z|U|14
5FL8|1|z|C|15
5FL8|1|z|U|16
5FL8|1|z|A|17
5FL8|1|z|C|18
*
5FL8|1|z|G|61
5FL8|1|z|U|62
5FL8|1|z|A|63
5FL8|1|z|A|64
5FL8|1|z|G|65
5FL8|1|z|A|66
5FL8|1|z|G|67
5FL8|1|z|C|68
5FL8|1|z|C|69
*
5FL8|1|z|G|109
5FL8|1|z|G|110
5FL8|1|z|U|111
5FL8|1|z|G|112
5FL8|1|z|C|113

Current chains

Chain z

5S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain J

60S ribosomal protein L11-A

Chain x

Large subunit ribosomal RNA; LSU rRNA