J3_5FL8_005
3D structure
- PDB id
- 5FL8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UGGGGCCGUUCCUUGUCUAUGUUC*GACGUCAUAGAGG*CGUGUGGCGAGGAGUGCGGUUCUUUGUA
- Length
- 65 nucleotides
- Bulged bases
- 5FL8|1|x|U|186, 5FL8|1|x|U|190, 5FL8|1|x|G|212, 5FL8|1|x|U|240, 5FL8|1|x|U|248, 5FL8|1|x|U|249, 5FL8|1|x|U|252
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FL8|1|x|U|169
5FL8|1|x|G|170
5FL8|1|x|G|171
5FL8|1|x|G|172
5FL8|1|x|G|173
5FL8|1|x|C|174
5FL8|1|x|C|175
5FL8|1|x|G|176
5FL8|1|x|U|177
5FL8|1|x|U|178
5FL8|1|x|C|179
5FL8|1|x|C|180
5FL8|1|x|U|181
5FL8|1|x|U|182
5FL8|1|x|G|183
5FL8|1|x|U|184
5FL8|1|x|C|185
5FL8|1|x|U|186
5FL8|1|x|A|187
5FL8|1|x|U|188
5FL8|1|x|G|189
5FL8|1|x|U|190
5FL8|1|x|U|191
5FL8|1|x|C|192
*
5FL8|1|x|G|203
5FL8|1|x|A|204
5FL8|1|x|C|205
5FL8|1|x|G|206
5FL8|1|x|U|207
5FL8|1|x|C|208
5FL8|1|x|A|209
5FL8|1|x|U|210
5FL8|1|x|A|211
5FL8|1|x|G|212
5FL8|1|x|A|213
5FL8|1|x|G|214
5FL8|1|x|G|215
*
5FL8|1|x|C|226
5FL8|1|x|G|227
5FL8|1|x|U|228
5FL8|1|x|G|229
5FL8|1|x|U|230
5FL8|1|x|G|231
5FL8|1|x|G|232
5FL8|1|x|C|233
5FL8|1|x|G|234
5FL8|1|x|A|235
5FL8|1|x|G|236
5FL8|1|x|G|237
5FL8|1|x|A|238
5FL8|1|x|G|239
5FL8|1|x|U|240
5FL8|1|x|G|241
5FL8|1|x|C|242
5FL8|1|x|G|243
5FL8|1|x|G|244
5FL8|1|x|U|245
5FL8|1|x|U|246
5FL8|1|x|C|247
5FL8|1|x|U|248
5FL8|1|x|U|249
5FL8|1|x|U|250
5FL8|1|x|G|251
5FL8|1|x|U|252
5FL8|1|x|A|253
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: