J3_5FL8_006
3D structure
- PDB id
- 5FL8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUAG*CGACCG*UGAGUAAGAGCA
- Length
- 67 nucleotides
- Bulged bases
- 5FL8|1|x|U|689, 5FL8|1|x|A|690, 5FL8|1|x|A|691, 5FL8|1|x|C|717, 5FL8|1|x|G|718, 5FL8|1|x|U|719, 5FL8|1|x|A|780, 5FL8|1|x|A|783, 5FL8|1|x|A|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FL8|1|x|U|673
5FL8|1|x|G|674
5FL8|1|x|C|675
5FL8|1|x|G|676
5FL8|1|x|A|677
5FL8|1|x|G|678
5FL8|1|x|U|679
5FL8|1|x|G|680
5FL8|1|x|U|681
5FL8|1|x|U|682
5FL8|1|x|U|683
5FL8|1|x|G|684
5FL8|1|x|G|685
5FL8|1|x|G|686
5FL8|1|x|U|687
5FL8|1|x|G|688
5FL8|1|x|U|689
5FL8|1|x|A|690
5FL8|1|x|A|691
5FL8|1|x|A|692
5FL8|1|x|A|693
5FL8|1|x|C|694
5FL8|1|x|C|695
5FL8|1|x|C|696
5FL8|1|x|A|697
5FL8|1|x|U|698
5FL8|1|x|A|699
5FL8|1|x|C|700
5FL8|1|x|G|701
5FL8|1|x|C|702
5FL8|1|x|G|703
5FL8|1|x|U|704
5FL8|1|x|A|705
5FL8|1|x|A|706
5FL8|1|x|U|707
5FL8|1|x|G|708
5FL8|1|x|A|709
5FL8|1|x|A|710
5FL8|1|x|A|711
5FL8|1|x|G|712
5FL8|1|x|U|713
5FL8|1|x|G|714
5FL8|1|x|A|715
5FL8|1|x|A|716
5FL8|1|x|C|717
5FL8|1|x|G|718
5FL8|1|x|U|719
5FL8|1|x|A|720
5FL8|1|x|G|721
*
5FL8|1|x|C|749
5FL8|1|x|G|750
5FL8|1|x|A|751
5FL8|1|x|C|752
5FL8|1|x|C|753
5FL8|1|x|G|754
*
5FL8|1|x|U|778
5FL8|1|x|G|779
5FL8|1|x|A|780
5FL8|1|x|G|781
5FL8|1|x|U|782
5FL8|1|x|A|783
5FL8|1|x|A|784
5FL8|1|x|G|785
5FL8|1|x|A|786
5FL8|1|x|G|787
5FL8|1|x|C|788
5FL8|1|x|A|789
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain a
- 60S ribosomal protein L28
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: