J3_5FL8_009
3D structure
- PDB id
- 5FL8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GAAAGGUUCCACGUCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAG*CGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAUAUGGAUUCUUCACGGUAACGUAACUGAAU*AGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUC
- Length
- 163 nucleotides
- Bulged bases
- 5FL8|1|x|U|1494, 5FL8|1|x|G|1507, 5FL8|1|x|U|1511, 5FL8|1|x|U|1523, 5FL8|1|x|C|1527, 5FL8|1|x|A|1588, 5FL8|1|x|A|1589, 5FL8|1|x|A|1593, 5FL8|1|x|A|1594, 5FL8|1|x|G|1604, 5FL8|1|x|U|1606, 5FL8|1|x|C|1628, 5FL8|1|x|U|1629, 5FL8|1|x|C|1631, 5FL8|1|x|A|1642, 5FL8|1|x|A|1643, 5FL8|1|x|C|1644, 5FL8|1|x|U|1815, 5FL8|1|x|U|1821, 5FL8|1|x|U|1840, 5FL8|1|x|C|1846, 5FL8|1|x|A|1847, 5FL8|1|x|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FL8|1|x|G|1488
5FL8|1|x|A|1489
5FL8|1|x|A|1490
5FL8|1|x|A|1491
5FL8|1|x|G|1492
5FL8|1|x|G|1493
5FL8|1|x|U|1494
5FL8|1|x|U|1495
5FL8|1|x|C|1496
5FL8|1|x|C|1497
5FL8|1|x|A|1498
5FL8|1|x|C|1499
5FL8|1|x|G|1500
5FL8|1|x|U|1501
5FL8|1|x|C|1502
5FL8|1|x|A|1503
5FL8|1|x|A|1504
5FL8|1|x|C|1505
5FL8|1|x|A|1506
5FL8|1|x|G|1507
5FL8|1|x|C|1508
5FL8|1|x|A|1509
5FL8|1|x|G|1510
5FL8|1|x|U|1511
5FL8|1|x|U|1512
5FL8|1|x|G|1513
5FL8|1|x|G|1514
5FL8|1|x|A|1515
5FL8|1|x|C|1516
5FL8|1|x|G|1517
5FL8|1|x|U|1518
5FL8|1|x|G|1519
5FL8|1|x|G|1520
5FL8|1|x|G|1521
5FL8|1|x|U|1522
5FL8|1|x|U|1523
5FL8|1|x|A|1524
5FL8|1|x|G|1525
5FL8|1|x|U|1526
5FL8|1|x|C|1527
5FL8|1|x|G|1528
5FL8|1|x|A|1529
5FL8|1|x|U|1530
5FL8|1|x|C|1531
5FL8|1|x|C|1532
5FL8|1|x|U|1533
5FL8|1|x|A|1534
5FL8|1|x|A|1535
5FL8|1|x|G|1536
*
5FL8|1|x|C|1585
5FL8|1|x|G|1586
5FL8|1|x|A|1587
5FL8|1|x|A|1588
5FL8|1|x|A|1589
5FL8|1|x|G|1590
5FL8|1|x|G|1591
5FL8|1|x|G|1592
5FL8|1|x|A|1593
5FL8|1|x|A|1594
5FL8|1|x|U|1595
5FL8|1|x|C|1596
5FL8|1|x|C|1597
5FL8|1|x|G|1598
5FL8|1|x|G|1599
5FL8|1|x|U|1600
5FL8|1|x|U|1601
5FL8|1|x|A|1602
5FL8|1|x|A|1603
5FL8|1|x|G|1604
5FL8|1|x|A|1605
5FL8|1|x|U|1606
5FL8|1|x|U|1607
5FL8|1|x|C|1608
5FL8|1|x|C|1609
5FL8|1|x|G|1610
5FL8|1|x|G|1611
5FL8|1|x|A|1612
5FL8|1|x|A|1613
5FL8|1|x|C|1614
5FL8|1|x|C|1615
5FL8|1|x|U|1616
5FL8|1|x|G|1617
5FL8|1|x|G|1618
5FL8|1|x|A|1619
5FL8|1|x|U|1620
5FL8|1|x|A|1621
5FL8|1|x|U|1622
5FL8|1|x|G|1623
5FL8|1|x|G|1624
5FL8|1|x|A|1625
5FL8|1|x|U|1626
5FL8|1|x|U|1627
5FL8|1|x|C|1628
5FL8|1|x|U|1629
5FL8|1|x|U|1630
5FL8|1|x|C|1631
5FL8|1|x|A|1632
5FL8|1|x|C|1633
5FL8|1|x|G|1634
5FL8|1|x|G|1635
5FL8|1|x|U|1636
5FL8|1|x|A|1637
5FL8|1|x|A|1638
5FL8|1|x|C|1639
5FL8|1|x|G|1640
5FL8|1|x|U|1641
5FL8|1|x|A|1642
5FL8|1|x|A|1643
5FL8|1|x|C|1644
5FL8|1|x|U|1645
5FL8|1|x|G|1646
5FL8|1|x|A|1647
5FL8|1|x|A|1648
5FL8|1|x|U|1649
*
5FL8|1|x|A|1806
5FL8|1|x|G|1807
5FL8|1|x|G|1808
5FL8|1|x|A|1809
5FL8|1|x|A|1810
5FL8|1|x|G|1811
5FL8|1|x|G|1812
5FL8|1|x|A|1813
5FL8|1|x|A|1814
5FL8|1|x|U|1815
5FL8|1|x|A|1816
5FL8|1|x|G|1817
5FL8|1|x|U|1818
5FL8|1|x|U|1819
5FL8|1|x|U|1820
5FL8|1|x|U|1821
5FL8|1|x|C|1822
5FL8|1|x|A|1823
5FL8|1|x|U|1824
5FL8|1|x|G|1825
5FL8|1|x|C|1826
5FL8|1|x|C|1827
5FL8|1|x|A|1828
5FL8|1|x|G|1829
5FL8|1|x|G|1830
5FL8|1|x|U|1831
5FL8|1|x|C|1832
5FL8|1|x|G|1833
5FL8|1|x|U|1834
5FL8|1|x|A|1835
5FL8|1|x|C|1836
5FL8|1|x|U|1837
5FL8|1|x|G|1838
5FL8|1|x|A|1839
5FL8|1|x|U|1840
5FL8|1|x|A|1841
5FL8|1|x|A|1842
5FL8|1|x|C|1843
5FL8|1|x|C|1844
5FL8|1|x|G|1845
5FL8|1|x|C|1846
5FL8|1|x|A|1847
5FL8|1|x|G|1848
5FL8|1|x|C|1849
5FL8|1|x|A|1850
5FL8|1|x|G|1851
5FL8|1|x|G|1852
5FL8|1|x|U|1853
5FL8|1|x|C|1854
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain R
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain g
- 60S ribosomal protein L34-A
- Chain j
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L38
- Chain l
- 60S ribosomal protein L39
- Chain u
- ARX1
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: