J3_5FL8_010
3D structure
- PDB id
- 5FL8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GGAG*UUCUUAAC*GGAAGAGGCCAGCACCUUUGCUGGCUC
- Length
- 39 nucleotides
- Bulged bases
- 5FL8|1|x|G|1751, 5FL8|1|x|U|1764, 5FL8|1|x|U|1765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FL8|1|x|G|1674
5FL8|1|x|G|1675
5FL8|1|x|A|1676
5FL8|1|x|G|1677
*
5FL8|1|x|U|1691
5FL8|1|x|U|1692
5FL8|1|x|C|1693
5FL8|1|x|U|1694
5FL8|1|x|U|1695
5FL8|1|x|A|1696
5FL8|1|x|A|1697
5FL8|1|x|C|1698
*
5FL8|1|x|G|1747
5FL8|1|x|G|1748
5FL8|1|x|A|1749
5FL8|1|x|A|1750
5FL8|1|x|G|1751
5FL8|1|x|A|1752
5FL8|1|x|G|1753
5FL8|1|x|G|1754
5FL8|1|x|C|1755
5FL8|1|x|C|1756
5FL8|1|x|A|1757
5FL8|1|x|G|1758
5FL8|1|x|C|1759
5FL8|1|x|A|1760
5FL8|1|x|C|1761
5FL8|1|x|C|1762
5FL8|1|x|U|1763
5FL8|1|x|U|1764
5FL8|1|x|U|1765
5FL8|1|x|G|1766
5FL8|1|x|C|1767
5FL8|1|x|U|1768
5FL8|1|x|G|1769
5FL8|1|x|G|1770
5FL8|1|x|C|1771
5FL8|1|x|U|1772
5FL8|1|x|C|1773
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain U
- 60S ribosomal protein L22-A
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- 60S ribosomal protein L38
- Chain u
- ARX1
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