J3_5GAD_001

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5GAD|1|A|U|686, 5GAD|1|A|A|792, 5GAD|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAD_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.078

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|U|683
5GAD|1|A|G|684
5GAD|1|A|A|685
5GAD|1|A|U|686
5GAD|1|A|C|687
5GAD|1|A|U|688
5GAD|1|A|A|689
*
5GAD|1|A|U|773
5GAD|1|A|G|774
5GAD|1|A|G|775
*
5GAD|1|A|C|791
5GAD|1|A|A|792
5GAD|1|A|A|793
5GAD|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34