J3_5GAF_008

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5GAF|1|A|A|2518, 5GAF|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAF_008 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0873

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5GAF|1|A|C|2517
5GAF|1|A|A|2518
5GAF|1|A|U|2519
5GAF|1|A|C|2520
*
5GAF|1|A|G|2545
5GAF|1|A|U|2546
5GAF|1|A|A|2547
*
5GAF|1|A|U|2561
5GAF|1|A|U|2562
5GAF|1|A|U|2563
5GAF|1|A|A|2564
5GAF|1|A|A|2565
5GAF|1|A|A|2566
5GAF|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L14