J3_5GAG_008

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5GAG|1|A|A|2518, 5GAG|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAG_008 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0924

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5GAG|1|A|C|2517
5GAG|1|A|A|2518
5GAG|1|A|U|2519
5GAG|1|A|C|2520
*
5GAG|1|A|G|2545
5GAG|1|A|U|2546
5GAG|1|A|A|2547
*
5GAG|1|A|U|2561
5GAG|1|A|U|2562
5GAG|1|A|U|2563
5GAG|1|A|A|2564
5GAG|1|A|A|2565
5GAG|1|A|A|2566
5GAG|1|A|G|2567

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L14