J3_5GAH_008

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5GAH|1|A|A|2518, 5GAH|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAH_008 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0874

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5GAH|1|A|C|2517
5GAH|1|A|A|2518
5GAH|1|A|U|2519
5GAH|1|A|C|2520
*
5GAH|1|A|G|2545
5GAH|1|A|U|2546
5GAH|1|A|A|2547
*
5GAH|1|A|U|2561
5GAH|1|A|U|2562
5GAH|1|A|U|2563
5GAH|1|A|A|2564
5GAH|1|A|A|2565
5GAH|1|A|A|2566
5GAH|1|A|G|2567

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L14