J3_5GAP_001

3D structure

PDB id

5GAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Body region of the U4/U6.U5 tri-snRNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAUA*UUUUU*AGU

Length

12 nucleotides

Bulged bases

5GAP|1|V|U|19, 5GAP|1|V|U|55, 5GAP|1|V|U|56

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAP|1|V|A|17
5GAP|1|V|A|18
5GAP|1|V|U|19
5GAP|1|V|A|20
*
5GAP|1|V|U|53
5GAP|1|V|U|54
5GAP|1|V|U|55
5GAP|1|V|U|56
5GAP|1|V|U|57
*
5GAP|1|W|A|62
5GAP|1|W|G|63
5GAP|1|W|U|64

Current chains

Chain V

U4 snRNA, 5' region, nucleotides 1-67

Chain W

U6 snRNA

Nearby chains

Chain A

Pre-mRNA-splicing factor 8

Chain F

Pre-mRNA-processing factor 31

Chain G

U4/U6 small nuclear ribonucleoprotein PRP3

Chain J

Pre-mRNA-splicing factor 6