J3_5GM6_003
3D structure
- PDB id
- 5GM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAG*CCGUUUUACA*UGCCUUUUGG
- Length
- 23 nucleotides
- Bulged bases
- 5GM6|1|E|U|89, 5GM6|1|E|U|90, 5GM6|1|E|A|91, 5GM6|1|E|C|92, 5GM6|1|L|C|15, 5GM6|1|L|U|16, 5GM6|1|L|U|17, 5GM6|1|L|U|18, 5GM6|1|L|U|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GM6|1|E|C|61
5GM6|1|E|A|62
5GM6|1|E|G|63
*
5GM6|1|E|C|84
5GM6|1|E|C|85
5GM6|1|E|G|86
5GM6|1|E|U|87
5GM6|1|E|U|88
5GM6|1|E|U|89
5GM6|1|E|U|90
5GM6|1|E|A|91
5GM6|1|E|C|92
5GM6|1|E|A|93
*
5GM6|1|L|U|12
5GM6|1|L|G|13
5GM6|1|L|C|14
5GM6|1|L|C|15
5GM6|1|L|U|16
5GM6|1|L|U|17
5GM6|1|L|U|18
5GM6|1|L|U|19
5GM6|1|L|G|20
5GM6|1|L|G|21
Current chains
- Chain E
- Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence
- Chain L
- U2 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain N
- Pre-mRNA
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain P
- Pre-mRNA-processing protein 45
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain c
- Pre-mRNA-splicing factor CEF1
- Chain d
- Pre-mRNA-splicing factor CLF1
- Chain f
- Pre-mRNA-splicing factor SYF2
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