J3_5GMK_002
3D structure
- PDB id
- 5GMK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAGU*ACCGUUUUACA*UGCCUUUUGG
- Length
- 25 nucleotides
- Bulged bases
- 5GMK|1|E|C|85, 5GMK|1|E|U|89, 5GMK|1|E|U|90, 5GMK|1|E|A|91, 5GMK|1|E|C|92, 5GMK|1|L|U|16, 5GMK|1|L|U|18, 5GMK|1|L|U|19, 5GMK|1|L|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GMK|1|E|C|61
5GMK|1|E|A|62
5GMK|1|E|G|63
5GMK|1|E|U|64
*
5GMK|1|E|A|83
5GMK|1|E|C|84
5GMK|1|E|C|85
5GMK|1|E|G|86
5GMK|1|E|U|87
5GMK|1|E|U|88
5GMK|1|E|U|89
5GMK|1|E|U|90
5GMK|1|E|A|91
5GMK|1|E|C|92
5GMK|1|E|A|93
*
5GMK|1|L|U|12
5GMK|1|L|G|13
5GMK|1|L|C|14
5GMK|1|L|C|15
5GMK|1|L|U|16
5GMK|1|L|U|17
5GMK|1|L|U|18
5GMK|1|L|U|19
5GMK|1|L|G|20
5GMK|1|L|G|21
Current chains
- Chain E
- U6 snRNA
- Chain L
- U2 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain B
- 5'-Exon
- Chain I
- Pre-mRNA-splicing factor SYF2
- Chain N
- 5'-Splicing Site
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain P
- Pre-mRNA-processing protein 45
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain c
- Pre-mRNA-splicing factor CEF1
- Chain d
- Pre-mRNA-splicing factor CLF1
Coloring options: