J3_5H4P_011
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 5H4P|1|1|G|2549, 5H4P|1|1|U|2550, 5H4P|1|1|U|2551, 5H4P|1|1|A|2554, 5H4P|1|1|U|2558, 5H4P|1|1|U|2559, 5H4P|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5H4P_011 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2052
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5H4P|1|1|A|2529
5H4P|1|1|G|2530
5H4P|1|1|C|2531
5H4P|1|1|U|2532
*
5H4P|1|1|A|2547
5H4P|1|1|C|2548
5H4P|1|1|G|2549
5H4P|1|1|U|2550
5H4P|1|1|U|2551
5H4P|1|1|C|2552
5H4P|1|1|U|2553
5H4P|1|1|A|2554
5H4P|1|1|G|2555
5H4P|1|1|C|2556
5H4P|1|1|A|2557
5H4P|1|1|U|2558
5H4P|1|1|U|2559
5H4P|1|1|C|2560
5H4P|1|1|A|2561
5H4P|1|1|A|2562
5H4P|1|1|G|2563
*
5H4P|1|1|U|2578
5H4P|1|1|G|2579
5H4P|1|1|A|2580
5H4P|1|1|U|2581
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
Coloring options: