J3_5H4P_014
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5H4P_014 not in the Motif Atlas
- Homologous match to J3_5TBW_015
- Geometric discrepancy: 0.2065
- The information below is about J3_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_48314.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5H4P|1|1|C|3298
5H4P|1|1|A|3299
5H4P|1|1|U|3300
*
5H4P|1|1|A|3314
5H4P|1|1|G|3315
5H4P|1|1|A|3316
5H4P|1|1|U|3317
5H4P|1|1|G|3318
*
5H4P|1|1|C|3388
5H4P|1|1|U|3389
5H4P|1|1|G|3390
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L17-A
- Chain d
- 60S ribosomal protein L31-A
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