J3_5H4P_021
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GUGAACUAUGCCUG*UGGGUAUAGGG*UAAUCGAAC
- Length
- 34 nucleotides
- Bulged bases
- 5H4P|1|1|A|817, 5H4P|1|1|A|921, 5H4P|1|1|U|922, 5H4P|1|1|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5H4P|1|1|G|813
5H4P|1|1|U|814
5H4P|1|1|G|815
5H4P|1|1|A|816
5H4P|1|1|A|817
5H4P|1|1|C|818
5H4P|1|1|U|819
5H4P|1|1|A|820
5H4P|1|1|U|821
5H4P|1|1|G|822
5H4P|1|1|C|823
5H4P|1|1|C|824
5H4P|1|1|U|825
5H4P|1|1|G|826
*
5H4P|1|1|U|899
5H4P|1|1|G|900
5H4P|1|1|G|901
5H4P|1|1|G|902
5H4P|1|1|U|903
5H4P|1|1|A|904
5H4P|1|1|U|905
5H4P|1|1|A|906
5H4P|1|1|G|907
5H4P|1|1|G|908
5H4P|1|1|G|909
*
5H4P|1|1|U|919
5H4P|1|1|A|920
5H4P|1|1|A|921
5H4P|1|1|U|922
5H4P|1|1|C|923
5H4P|1|1|G|924
5H4P|1|1|A|925
5H4P|1|1|A|926
5H4P|1|1|C|927
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S ribosomal protein L2-A
- Chain C
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L15-A
- Chain P
- 60S ribosomal protein L17-A
- Chain g
- 60S ribosomal protein L34-A
- Chain j
- 60S ribosomal protein L37-A
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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