J3_5H4P_023

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGAAA*UGAUAAC*GUCU

Length

16 nucleotides

Bulged bases

5H4P|1|1|U|1840, 5H4P|1|1|A|1841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5H4P|1|1|G|1487
5H4P|1|1|G|1488
5H4P|1|1|A|1489
5H4P|1|1|A|1490
5H4P|1|1|A|1491
*
5H4P|1|1|U|1837
5H4P|1|1|G|1838
5H4P|1|1|A|1839
5H4P|1|1|U|1840
5H4P|1|1|A|1841
5H4P|1|1|A|1842
5H4P|1|1|C|1843
*
5H4P|1|1|G|1852
5H4P|1|1|U|1853
5H4P|1|1|C|1854
5H4P|1|1|U|1855

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S ribosomal protein L34-A

Chain j

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L39