Loop J3_5H4P

3D structure

PDB id: 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.07 Å

Loop

Sequence: AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUU
Length: 36 nucleotides
Bulged bases: 5H4P|1|1|A|3172, 5H4P|1|1|G|3173, 5H4P|1|1|A|3215, 5H4P|1|1|G|3216, 5H4P|1|1|C|3217, 5H4P|1|1|G|3219, 5H4P|1|1|A|3268, 5H4P|1|1|U|3270, 5H4P|1|1|C|3272
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5H4P|1|1|A|3168
5H4P|1|1|U|3169
5H4P|1|1|A|3170
5H4P|1|1|U|3171
5H4P|1|1|A|3172
5H4P|1|1|G|3173
5H4P|1|1|A|3174
5H4P|1|1|U|3175
5H4P|1|1|G|3176
*
5H4P|1|1|C|3212
5H4P|1|1|A|3213
5H4P|1|1|U|3214
5H4P|1|1|A|3215
5H4P|1|1|G|3216
5H4P|1|1|C|3217
5H4P|1|1|A|3218
5H4P|1|1|G|3219
5H4P|1|1|G|3220
*
5H4P|1|1|C|3265
5H4P|1|1|G|3266
5H4P|1|1|A|3267
5H4P|1|1|A|3268
5H4P|1|1|U|3269
5H4P|1|1|U|3270
5H4P|1|1|G|3271
5H4P|1|1|C|3272
5H4P|1|1|A|3273
5H4P|1|1|A|3274
5H4P|1|1|U|3275
5H4P|1|1|G|3276
5H4P|1|1|U|3277
5H4P|1|1|C|3278
5H4P|1|1|A|3279
5H4P|1|1|U|3280
5H4P|1|1|U|3281
5H4P|1|1|U|3282

Current chains

Chain 1: 25S ribosomal RNA

Nearby chains

Chain E: 60S ribosomal protein L6-A
Chain M: 60S ribosomal protein L14-A
Chain O: 60S ribosomal protein L16-A
Chain P: 60S ribosomal protein L17-A
Chain f: 60S ribosomal protein L33-A

J3_5H4P_028