J3_5H5U_003

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5H5U|1|A|U|686, 5H5U|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5H5U_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0593

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5H5U|1|A|U|683
5H5U|1|A|G|684
5H5U|1|A|A|685
5H5U|1|A|U|686
5H5U|1|A|C|687
5H5U|1|A|U|688
5H5U|1|A|A|689
*
5H5U|1|A|U|773
5H5U|1|A|G|774
5H5U|1|A|G|775
*
5H5U|1|A|C|791
5H5U|1|A|A|792
5H5U|1|A|A|793
5H5U|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34