J3_5H5U_004

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5H5U_004 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0614

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5H5U|1|A|C|698
5H5U|1|A|A|699
5H5U|1|A|G|700
*
5H5U|1|A|C|732
5H5U|1|A|G|733
5H5U|1|A|A|734
5H5U|1|A|A|735
5H5U|1|A|C|736
*
5H5U|1|A|G|760
5H5U|1|A|A|761
5H5U|1|A|U|762
5H5U|1|A|G|763

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2