J3_5H5U_025

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5H5U_025 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.166

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5H5U|1|h|U|1073
5H5U|1|h|G|1074
*
5H5U|1|h|U|1083
5H5U|1|h|G|1084
5H5U|1|h|U|1085
5H5U|1|h|U|1086
5H5U|1|h|G|1087
*
5H5U|1|h|C|1098
5H5U|1|h|G|1099
5H5U|1|h|C|1100
5H5U|1|h|A|1101
5H5U|1|h|A|1102

Current chains

Chain h

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S2

Chain l

30S ribosomal protein S5