J3_5H5U_036

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5H5U|1|h|U|1212, 5H5U|1|h|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5H5U_036 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1227

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5H5U|1|h|C|990
5H5U|1|h|U|991
5H5U|1|h|U|992
5H5U|1|h|G|993
5H5U|1|h|A|994
5H5U|1|h|C|995
5H5U|1|h|A|996
5H5U|1|h|U|997
*
5H5U|1|h|A|1044
5H5U|1|h|C|1045
5H5U|1|h|A|1046
5H5U|1|h|G|1047
*
5H5U|1|h|C|1210
5H5U|1|h|U|1211
5H5U|1|h|U|1212
5H5U|1|h|A|1213
5H5U|1|h|C|1214
5H5U|1|h|G|1215

Current chains

Chain h

16S rRNA

Nearby chains

Chain 4

Peptide chain release factor 2

Chain u

30S ribosomal protein S14