J3_5HAU_016

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_016 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.3025

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HAU|1|1a|G|981
5HAU|1|1a|G|982
5HAU|1|1a|A|983
5HAU|1|1a|A|984
5HAU|1|1a|C|985
*
5HAU|1|1a|G|1002
5HAU|1|1a|G|1003
5HAU|1|1a|U|1004
5HAU|1|1a|G|1005
5HAU|1|1a|C|1006
5HAU|1|1a|C|1007
*
5HAU|1|1a|G|1016
5HAU|1|1a|G|1017
5HAU|1|1a|A|1018
5HAU|1|1a|G|1019
5HAU|1|1a|C|1020
5HAU|1|1a|C|1021

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains