J3_5HAU_021

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_021 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0515

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5HAU|1|2A|C|744
5HAU|1|2A|A|745
5HAU|1|2A|G|746
*
5HAU|1|2A|C|778
5HAU|1|2A|G|779
5HAU|1|2A|A|780
5HAU|1|2A|A|781
5HAU|1|2A|C|782
*
5HAU|1|2A|G|806
5HAU|1|2A|A|807
5HAU|1|2A|U|808
5HAU|1|2A|G|809

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2