J3_5HAU_022

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAG*CUUUAAAGAGUG*CUCAC

Length

21 nucleotides

Bulged bases

5HAU|1|2A|A|1133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HAU|1|2A|G|1100
5HAU|1|2A|G|1101
5HAU|1|2A|A|1102
5HAU|1|2A|G|1103
*
5HAU|1|2A|C|1125
5HAU|1|2A|U|1126
5HAU|1|2A|U|1127
5HAU|1|2A|U|1128
5HAU|1|2A|A|1129
5HAU|1|2A|A|1130
5HAU|1|2A|A|1131
5HAU|1|2A|G|1132
5HAU|1|2A|A|1133
5HAU|1|2A|G|1134
5HAU|1|2A|U|1135
5HAU|1|2A|G|1136
*
5HAU|1|2A|C|1145
5HAU|1|2A|U|1146
5HAU|1|2A|C|1147
5HAU|1|2A|A|1148
5HAU|1|2A|C|1149

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L36

Chain 2J

50S ribosomal protein L10

Chain 2K

50S ribosomal protein L11