J3_5HAU_029

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_029 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0771

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5HAU|1|2a|C|914
5HAU|1|2a|A|915
5HAU|1|2a|A|916
5HAU|1|2a|G|917
*
5HAU|1|2a|C|1326
5HAU|1|2a|U|1327
5HAU|1|2a|A|1328
5HAU|1|2a|G|1329
5HAU|1|2a|U|1330
5HAU|1|2a|A|1331
5HAU|1|2a|A|1332
*
5HAU|1|2a|U|1355
5HAU|1|2a|G|1356
5HAU|1|2a|A|1357
5HAU|1|2a|A|1358
5HAU|1|2a|U|1359
5HAU|1|2a|A|1360
5HAU|1|2a|C|1361
5HAU|1|2a|G|1362

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9