J3_5HAU_040
3D structure
- PDB id
- 5HAU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 5HAU|1|1A|U|70, 5HAU|1|1A|A|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HAU_040 not in the Motif Atlas
- Homologous match to J3_9DFE_004
- Geometric discrepancy: 0.0579
- The information below is about J3_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5HAU|1|1A|A|54
5HAU|1|1A|C|55
*
5HAU|1|1A|G|68
5HAU|1|1A|A|69
5HAU|1|1A|U|70
5HAU|1|1A|A|71
5HAU|1|1A|A|72
5HAU|1|1A|G|73
5HAU|1|1A|C|74
*
5HAU|1|1A|G|107
5HAU|1|1A|A|108
5HAU|1|1A|U|109
5HAU|1|1A|G|110
5HAU|1|1A|U|111
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L29
- Chain 15
- 50S ribosomal protein L34
- Chain 1V
- 50S ribosomal protein L23
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