J3_5HAU_045
3D structure
- PDB id
- 5HAU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5HAU|1|1A|A|2399, 5HAU|1|1A|A|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HAU_045 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.052
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5HAU|1|1A|G|2293
5HAU|1|1A|C|2294
5HAU|1|1A|C|2295
*
5HAU|1|1A|G|2395
5HAU|1|1A|C|2396
5HAU|1|1A|C|2397
5HAU|1|1A|U|2398
5HAU|1|1A|A|2399
5HAU|1|1A|G|2400
5HAU|1|1A|U|2401
5HAU|1|1A|G|2402
5HAU|1|1A|A|2403
5HAU|1|1A|A|2404
5HAU|1|1A|C|2405
5HAU|1|1A|C|2406
*
5HAU|1|1A|G|2432
5HAU|1|1A|A|2433
5HAU|1|1A|U|2434
5HAU|1|1A|C|2435
5HAU|1|1A|A|2436
5HAU|1|1A|A|2437
5HAU|1|1A|C|2438
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 14
- 50S ribosomal protein L33
- Chain 16
- 50S ribosomal protein L35
- Chain 1N
- 50S ribosomal protein L15
- Chain 1Y
- 50S ribosomal protein L27
- Chain 1Z
- 50S ribosomal protein L28
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