J3_5HCP_018

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HCP_018 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0515

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5HCP|1|2A|C|744
5HCP|1|2A|A|745
5HCP|1|2A|G|746
*
5HCP|1|2A|C|778
5HCP|1|2A|G|779
5HCP|1|2A|A|780
5HCP|1|2A|A|781
5HCP|1|2A|C|782
*
5HCP|1|2A|G|806
5HCP|1|2A|A|807
5HCP|1|2A|U|808
5HCP|1|2A|G|809

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2