J3_5HCP_028
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 5HCP|1|2a|A|953, 5HCP|1|2a|G|954, 5HCP|1|2a|A|956
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCP_028 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.105
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5HCP|1|2a|U|933
5HCP|1|2a|U|934
5HCP|1|2a|U|935
5HCP|1|2a|A|936
5HCP|1|2a|A|937
5HCP|1|2a|U|938
5HCP|1|2a|U|939
5HCP|1|2a|C|940
*
5HCP|1|2a|G|951
5HCP|1|2a|A|952
5HCP|1|2a|A|953
5HCP|1|2a|G|954
5HCP|1|2a|A|955
5HCP|1|2a|A|956
5HCP|1|2a|C|957
5HCP|1|2a|C|958
5HCP|1|2a|U|959
5HCP|1|2a|U|960
5HCP|1|2a|A|961
5HCP|1|2a|C|962
*
5HCP|1|2a|G|1203
5HCP|1|2a|G|1204
5HCP|1|2a|C|1205
5HCP|1|2a|G|1206
5HCP|1|2a|A|1207
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2j
- 30S ribosomal protein S10
- Chain 2m
- 30S ribosomal protein S13
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2s
- 30S ribosomal protein S19
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