J3_5HCP_029

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HCP_029 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.2384

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5HCP|1|2a|C|968
5HCP|1|2a|U|969
5HCP|1|2a|U|970
5HCP|1|2a|G|971
*
5HCP|1|2a|C|1028
5HCP|1|2a|A|1029
5HCP|1|2a|G|1030
*
5HCP|1|2a|C|1192
5HCP|1|2a|U|1193
5HCP|1|2a|U|1194
5HCP|1|2a|A|1195
5HCP|1|2a|C|1196
5HCP|1|2a|G|1197

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z