J3_5HCP_041
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5HCP|1|1A|A|2399, 5HCP|1|1A|U|2401, 5HCP|1|1A|A|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCP_041 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0586
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5HCP|1|1A|G|2293
5HCP|1|1A|C|2294
5HCP|1|1A|C|2295
*
5HCP|1|1A|G|2395
5HCP|1|1A|C|2396
5HCP|1|1A|C|2397
5HCP|1|1A|U|2398
5HCP|1|1A|A|2399
5HCP|1|1A|G|2400
5HCP|1|1A|U|2401
5HCP|1|1A|G|2402
5HCP|1|1A|A|2403
5HCP|1|1A|A|2404
5HCP|1|1A|C|2405
5HCP|1|1A|C|2406
*
5HCP|1|1A|G|2432
5HCP|1|1A|A|2433
5HCP|1|1A|U|2434
5HCP|1|1A|C|2435
5HCP|1|1A|A|2436
5HCP|1|1A|A|2437
5HCP|1|1A|C|2438
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
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