J3_5HCP_057

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

AGGAGGUUGG*CAUCCUUUAAAGAGUG*CUCACU

Length

32 nucleotides

Bulged bases

5HCP|1|2A|U|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCP|1|2A|A|1099
5HCP|1|2A|G|1100
5HCP|1|2A|G|1101
5HCP|1|2A|A|1102
5HCP|1|2A|G|1103
5HCP|1|2A|G|1104
5HCP|1|2A|U|1105
5HCP|1|2A|U|1106
5HCP|1|2A|G|1107
5HCP|1|2A|G|1108
*
5HCP|1|2A|C|1121
5HCP|1|2A|A|1122
5HCP|1|2A|U|1123
5HCP|1|2A|C|1124
5HCP|1|2A|C|1125
5HCP|1|2A|U|1126
5HCP|1|2A|U|1127
5HCP|1|2A|U|1128
5HCP|1|2A|A|1129
5HCP|1|2A|A|1130
5HCP|1|2A|A|1131
5HCP|1|2A|G|1132
5HCP|1|2A|A|1133
5HCP|1|2A|G|1134
5HCP|1|2A|U|1135
5HCP|1|2A|G|1136
*
5HCP|1|2A|C|1145
5HCP|1|2A|U|1146
5HCP|1|2A|C|1147
5HCP|1|2A|A|1148
5HCP|1|2A|C|1149
5HCP|1|2A|U|1150

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25