J3_5HCP_064

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GCCUAAG*UAGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

5HCP|1|2a|C|49, 5HCP|1|2a|A|51, 5HCP|1|2a|A|52, 5HCP|1|2a|U|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCP|1|2a|G|47
5HCP|1|2a|C|48
5HCP|1|2a|C|49
5HCP|1|2a|U|50
5HCP|1|2a|A|51
5HCP|1|2a|A|52
5HCP|1|2a|G|53
*
5HCP|1|2a|U|355
5HCP|1|2a|A|356
5HCP|1|2a|G|357
5HCP|1|2a|G|358
5HCP|1|2a|A|359
5HCP|1|2a|A|360
5HCP|1|2a|U|361
5HCP|1|2a|C|362
5HCP|1|2a|U|363
5HCP|1|2a|U|364
5HCP|1|2a|C|365
*
5HCP|1|2a|G|388
5HCP|1|2a|A|389
5HCP|1|2a|G|390
5HCP|1|2a|C|391

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16