J3_5HCQ_004
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAG*CGCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 5HCQ|1|1A|A|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCQ_004 not in the Motif Atlas
- Homologous match to J3_7RQB_008
- Geometric discrepancy: 0.0339
- The information below is about J3_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16623.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5HCQ|1|1A|C|1351
5HCQ|1|1A|A|1352
5HCQ|1|1A|A|1353
5HCQ|1|1A|G|1354
*
5HCQ|1|1A|C|1650
5HCQ|1|1A|G|1651
5HCQ|1|1A|C|1652
5HCQ|1|1A|A|1653
5HCQ|1|1A|A|1654
5HCQ|1|1A|A|1655
5HCQ|1|1A|C|1656
*
5HCQ|1|1A|G|1665
5HCQ|1|1A|U|1666
5HCQ|1|1A|G|1667
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
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