J3_5HCQ_019

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UUUAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

5HCQ|1|2A|A|1133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCQ|1|2A|G|1100
5HCQ|1|2A|G|1101
5HCQ|1|2A|A|1102
*
5HCQ|1|2A|U|1126
5HCQ|1|2A|U|1127
5HCQ|1|2A|U|1128
5HCQ|1|2A|A|1129
5HCQ|1|2A|A|1130
5HCQ|1|2A|A|1131
5HCQ|1|2A|G|1132
5HCQ|1|2A|A|1133
5HCQ|1|2A|G|1134
5HCQ|1|2A|U|1135
5HCQ|1|2A|G|1136
*
5HCQ|1|2A|C|1145
5HCQ|1|2A|U|1146
5HCQ|1|2A|C|1147
5HCQ|1|2A|A|1148
5HCQ|1|2A|C|1149

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2Q

50S ribosomal protein L16