J3_5HD1_049
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HD1_049 not in the Motif Atlas
- Homologous match to J3_6CZR_024
- Geometric discrepancy: 0.1378
- The information below is about J3_6CZR_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04260.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5HD1|1|1a|U|1056
5HD1|1|1a|G|1057
*
5HD1|1|1a|U|1066
5HD1|1|1a|G|1067
5HD1|1|1a|U|1068
5HD1|1|1a|U|1069
5HD1|1|1a|G|1070
*
5HD1|1|1a|C|1081
5HD1|1|1a|G|1082
5HD1|1|1a|C|1083
5HD1|1|1a|A|1084
5HD1|1|1a|A|1085
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1e
- 30S ribosomal protein S5
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