3D structure

PDB id
5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GC*GGAAUCUUC*GAGC
Length
15 nucleotides
Bulged bases
5HD1|1|2a|U|364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5HD1|1|2a|G|47
5HD1|1|2a|C|48
*
5HD1|1|2a|G|357
5HD1|1|2a|G|358
5HD1|1|2a|A|359
5HD1|1|2a|A|360
5HD1|1|2a|U|361
5HD1|1|2a|C|362
5HD1|1|2a|U|363
5HD1|1|2a|U|364
5HD1|1|2a|C|365
*
5HD1|1|2a|G|388
5HD1|1|2a|A|389
5HD1|1|2a|G|390
5HD1|1|2a|C|391

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2l
30S ribosomal protein S12
Chain 2p
30S ribosomal protein S16

Coloring options:

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