J3_5HD1_067

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCACAAG*CUAGUAA*UGAAUACGUUCCC

Length

27 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HD1|1|2a|G|911
5HD1|1|2a|C|912
5HD1|1|2a|A|913
5HD1|1|2a|C|914
5HD1|1|2a|A|915
5HD1|1|2a|A|916
5HD1|1|2a|G|917
*
5HD1|1|2a|C|1326
5HD1|1|2a|U|1327
5HD1|1|2a|A|1328
5HD1|1|2a|G|1329
5HD1|1|2a|U|1330
5HD1|1|2a|A|1331
5HD1|1|2a|A|1332
*
5HD1|1|2a|U|1355
5HD1|1|2a|G|1356
5HD1|1|2a|A|1357
5HD1|1|2a|A|1358
5HD1|1|2a|U|1359
5HD1|1|2a|A|1360
5HD1|1|2a|C|1361
5HD1|1|2a|G|1362
5HD1|1|2a|U|1363
5HD1|1|2a|U|1364
5HD1|1|2a|C|1365
5HD1|1|2a|C|1366
5HD1|1|2a|C|1367

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2x

Transfer RNA; tRNA