J3_5HKV_005

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HKV_005 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.074

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5HKV|1|X|C|1335
5HKV|1|X|G|1336
5HKV|1|X|A|1337
5HKV|1|X|U|1338
5HKV|1|X|U|1339
5HKV|1|X|G|1340
*
5HKV|1|X|C|1669
5HKV|1|X|A|1670
5HKV|1|X|A|1671
*
5HKV|1|X|U|1683
5HKV|1|X|A|1684
5HKV|1|X|A|1685
5HKV|1|X|G|1686

Current chains

Chain X

23s ribosomal RNA

Nearby chains