J3_5HKV_007

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUGCC*GGCGCUAAGGUAG*CGAAAG

Length

24 nucleotides

Bulged bases

5HKV|1|X|A|1998

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|X|C|1860
5HKV|1|X|U|1861
5HKV|1|X|G|1862
5HKV|1|X|C|1863
5HKV|1|X|C|1864
*
5HKV|1|X|G|1930
5HKV|1|X|G|1931
5HKV|1|X|C|1932
5HKV|1|X|G|1933
5HKV|1|X|C|1952
5HKV|1|X|U|1953
5HKV|1|X|A|1954
5HKV|1|X|A|1955
5HKV|1|X|G|1956
5HKV|1|X|G|1957
5HKV|1|X|U|1958
5HKV|1|X|A|1959
5HKV|1|X|G|1960
*
5HKV|1|X|C|1994
5HKV|1|X|G|1995
5HKV|1|X|A|1996
5HKV|1|X|A|1997
5HKV|1|X|A|1998
5HKV|1|X|G|1999

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2