J3_5HKV_008

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HKV_008 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.122

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5HKV|1|X|U|2118
5HKV|1|X|U|2119
5HKV|1|X|G|2120
*
5HKV|1|X|C|2223
5HKV|1|X|U|2224
5HKV|1|X|A|2225
5HKV|1|X|A|2226
5HKV|1|X|C|2227
5HKV|1|X|C|2228
*
5HKV|1|X|G|2249
5HKV|1|X|A|2250
5HKV|1|X|G|2251
5HKV|1|X|A|2252
5HKV|1|X|C|2253
5HKV|1|X|A|2254
5HKV|1|X|G|2255

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28