J3_5HKV_011

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CA*UAUAAGA*UCGAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|X|C|2816
5HKV|1|X|A|2817
*
5HKV|1|X|U|2826
5HKV|1|X|A|2827
5HKV|1|X|U|2828
5HKV|1|X|A|2829
5HKV|1|X|A|2830
5HKV|1|X|G|2831
5HKV|1|X|A|2832
*
5HKV|1|X|U|2908
5HKV|1|X|C|2909
5HKV|1|X|G|2910
5HKV|1|X|A|2911
5HKV|1|X|A|2912
5HKV|1|X|G|2913

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32