J3_5HKV_017

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HKV_017 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.1073

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5HKV|1|X|G|1468
5HKV|1|X|G|1469
5HKV|1|X|G|1470
5HKV|1|X|A|1471
5HKV|1|X|C|1472
5HKV|1|X|G|1473
*
5HKV|1|X|C|1611
5HKV|1|X|C|1612
*
5HKV|1|X|G|1615
5HKV|1|X|A|1616
5HKV|1|X|A|1617
5HKV|1|X|A|1618
5HKV|1|X|A|1619
5HKV|1|X|G|1620
5HKV|1|X|C|1621

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2