J3_5HL7_009

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUGC*GCGGCUAAGGUAG*CGAAAG

Length

23 nucleotides

Bulged bases

5HL7|1|X|C|1932, 5HL7|1|X|A|1998

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HL7|1|X|C|1860
5HL7|1|X|U|1861
5HL7|1|X|G|1862
5HL7|1|X|C|1863
*
5HL7|1|X|G|1931
5HL7|1|X|C|1932
5HL7|1|X|G|1933
5HL7|1|X|G|1934
5HL7|1|X|C|1952
5HL7|1|X|U|1953
5HL7|1|X|A|1954
5HL7|1|X|A|1955
5HL7|1|X|G|1956
5HL7|1|X|G|1957
5HL7|1|X|U|1958
5HL7|1|X|A|1959
5HL7|1|X|G|1960
*
5HL7|1|X|C|1994
5HL7|1|X|G|1995
5HL7|1|X|A|1996
5HL7|1|X|A|1997
5HL7|1|X|A|1998
5HL7|1|X|G|1999

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2