J3_5HL7_019

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGGACGC*GCC*GAAAAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HL7|1|X|G|1468
5HL7|1|X|G|1469
5HL7|1|X|G|1470
5HL7|1|X|A|1471
5HL7|1|X|C|1472
5HL7|1|X|G|1473
5HL7|1|X|C|1474
*
5HL7|1|X|G|1610
5HL7|1|X|C|1611
5HL7|1|X|C|1612
*
5HL7|1|X|G|1615
5HL7|1|X|A|1616
5HL7|1|X|A|1617
5HL7|1|X|A|1618
5HL7|1|X|A|1619
5HL7|1|X|G|1620
5HL7|1|X|C|1621

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2