J3_5HL7_020

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GCU*ACUUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

5HL7|1|X|U|2417, 5HL7|1|X|A|2453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HL7_020 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.1483

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5HL7|1|X|G|2309
5HL7|1|X|C|2310
5HL7|1|X|U|2311
*
5HL7|1|X|A|2411
5HL7|1|X|C|2412
5HL7|1|X|U|2413
5HL7|1|X|U|2414
5HL7|1|X|A|2415
5HL7|1|X|G|2416
5HL7|1|X|U|2417
5HL7|1|X|G|2418
5HL7|1|X|A|2419
5HL7|1|X|U|2420
5HL7|1|X|C|2421
5HL7|1|X|C|2422
*
5HL7|1|X|G|2448
5HL7|1|X|C|2449
5HL7|1|X|U|2450
5HL7|1|X|C|2451
5HL7|1|X|A|2452
5HL7|1|X|A|2453
5HL7|1|X|C|2454

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15

Chain T

50S ribosomal protein L27