J3_5I4L_073

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5I4L|1|2|A|217, 5I4L|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5I4L|1|2|A|213
5I4L|1|2|G|214
5I4L|1|2|A|215
5I4L|1|2|U|216
5I4L|1|2|A|217
5I4L|1|2|A|218
5I4L|1|2|A|219
5I4L|1|2|A|220
5I4L|1|2|A|221
5I4L|1|2|A|222
5I4L|1|2|U|223
5I4L|1|2|C|224
5I4L|1|2|A|225
5I4L|1|2|A|226
5I4L|1|2|U|227
5I4L|1|2|G|228
*
5I4L|1|2|C|237
5I4L|1|2|U|238
5I4L|1|2|C|239
5I4L|1|2|U|240
5I4L|1|2|U|241
5I4L|1|2|U|242
5I4L|1|2|G|243
*
5I4L|1|2|C|250
5I4L|1|2|A|251
5I4L|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A