J3_5I4L_084

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGCC

Length

21 nucleotides

Bulged bases

5I4L|1|5|C|2760, 5I4L|1|5|C|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5I4L_084 not in the Motif Atlas

Homologous match to J3_8P9A_061

Geometric discrepancy: 0.0429

The information below is about J3_8P9A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5I4L|1|5|G|2651
5I4L|1|5|U|2652
5I4L|1|5|C|2653
*
5I4L|1|5|G|2754
5I4L|1|5|C|2755
5I4L|1|5|C|2756
5I4L|1|5|U|2757
5I4L|1|5|A|2758
5I4L|1|5|U|2759
5I4L|1|5|C|2760
5I4L|1|5|G|2761
5I4L|1|5|A|2762
5I4L|1|5|U|2763
5I4L|1|5|C|2764
5I4L|1|5|C|2765
*
5I4L|1|5|G|2793
5I4L|1|5|G|2794
5I4L|1|5|U|2795
5I4L|1|5|G|2796
5I4L|1|5|C|2797
5I4L|1|5|C|2798

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m8

60S ribosomal protein L18-A

Chain n1

60S ribosomal protein L21-A

Chain n8

60S ribosomal protein L28

Chain q2

60S ribosomal protein L42-A