3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
Length
30 nucleotides
Bulged bases
5I4L|1|5|A|3172, 5I4L|1|5|G|3173, 5I4L|1|5|A|3215, 5I4L|1|5|G|3216, 5I4L|1|5|G|3219, 5I4L|1|5|A|3268, 5I4L|1|5|U|3270, 5I4L|1|5|C|3272, 5I4L|1|5|U|3275, 5I4L|1|5|G|3276
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5I4L_085 not in the Motif Atlas
Homologous match to J3_8P9A_064
Geometric discrepancy: 0.365
The information below is about J3_8P9A_064
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_03190.1
Basepair signature
cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
Number of instances in this motif group
1

Unit IDs

5I4L|1|5|U|3171
5I4L|1|5|A|3172
5I4L|1|5|G|3173
5I4L|1|5|A|3174
5I4L|1|5|U|3175
5I4L|1|5|G|3176
*
5I4L|1|5|C|3212
5I4L|1|5|A|3213
5I4L|1|5|U|3214
5I4L|1|5|A|3215
5I4L|1|5|G|3216
5I4L|1|5|C|3217
5I4L|1|5|A|3218
5I4L|1|5|G|3219
5I4L|1|5|G|3220
*
5I4L|1|5|C|3265
5I4L|1|5|G|3266
5I4L|1|5|A|3267
5I4L|1|5|A|3268
5I4L|1|5|U|3269
5I4L|1|5|U|3270
5I4L|1|5|G|3271
5I4L|1|5|C|3272
5I4L|1|5|A|3273
5I4L|1|5|A|3274
5I4L|1|5|U|3275
5I4L|1|5|G|3276
5I4L|1|5|U|3277
5I4L|1|5|C|3278
5I4L|1|5|A|3279

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l6
60S ribosomal protein L6-A
Chain m4
60S ribosomal protein L14-A
Chain m6
60S ribosomal protein L16-A
Chain o3
60S ribosomal protein L33-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6423 s
Application loaded.