3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AAC*GGACUA*UGGAAGUUU
Length
18 nucleotides
Bulged bases
5I4L|1|6|U|1390, 5I4L|1|6|U|1413, 5I4L|1|6|U|1414
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5I4L_089 not in the Motif Atlas
Homologous match to J3_8P9A_083
Geometric discrepancy: 0.0744
The information below is about J3_8P9A_083
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_88233.1
Basepair signature
cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
Number of instances in this motif group
2

Unit IDs

5I4L|1|6|A|1336
5I4L|1|6|A|1337
5I4L|1|6|C|1338
*
5I4L|1|6|G|1386
5I4L|1|6|G|1387
5I4L|1|6|A|1388
5I4L|1|6|C|1389
5I4L|1|6|U|1390
5I4L|1|6|A|1391
*
5I4L|1|6|U|1407
5I4L|1|6|G|1408
5I4L|1|6|G|1409
5I4L|1|6|A|1410
5I4L|1|6|A|1411
5I4L|1|6|G|1412
5I4L|1|6|U|1413
5I4L|1|6|U|1414
5I4L|1|6|U|1415

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c6
40S ribosomal protein S16-A
Chain c7
40S ribosomal protein S17-A
Chain d0
40S ribosomal protein S20
Chain d9
40S ribosomal protein S29-A
Chain s5
40S ribosomal protein S5
Chain sR
Guanine nucleotide-binding protein subunit beta-like protein

Coloring options:


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